Comparative analysis of asynchronous cellular automata in stochastic pharmaceutical modelling
نویسندگان
چکیده
In pharmaceutical modelling, cellular automata have been used as an established tool to represent molecular changes through discrete structural interactions. The data quality provided by such modelling is found suitable for the early drug design phase where flexibility is paramount. While both synchronous (CA) and asynchronous (ACA) types of automata have been used, analysis of their nature and comparative influence on model outputs is lacking. In this paper, we outline a representative probabilistic CA for modelling complex controlled drug formulations and investigate its transition from synchronous to asynchronous update algorithms. The key investigation points include quantification of model dynamics through three distinct scenarios, parallelisation performance and the ability to describe different release phenomena, namely erosion, diffusion and swelling. The choice of the appropriate update mechanism impacts the perceived realism of the simulation as well as the applicability of large-scale simulations.
منابع مشابه
Probabilistic Pharmaceutical Modelling: A Comparison Between Synchronous and Asynchronous Cellular Automata
The field of pharmaceutical modelling has, in recent years, benefited from using probabilistic methods based on cellular automata, which seek to overcome some of the limitations of differential equation based models. By modelling discrete structural element interactions instead, these are able to provide data quality adequate for the early design phases in drug modelling. In relevant literature...
متن کاملMethods for Cellular Automata and Evolution Systems in Modelling and Simulation
Cellular automata provide an interesting concept for modelling and simulation. Besides advanced modelling approaches like the Lattice Boltzmann Method cellular automata are also used for simulation in population dynamics, reaction diffusion systems or bio-medicine. While the basic concepts of cellular automata are rather clear and unambiguous, there exists no general mathematical formalism as t...
متن کاملProgresses in the Analysis of Stochastic 2D Cellular Automata: A Study of Asynchronous 2D Minority
Cellular automata are often used to model systems in physics, social sciences, biology that are inherently asynchronous. Over the past 20 years, studies have demonstrated that the behavior of cellular automata drastically changed under asynchronous updates. Still, the few mathematical analyses of asynchronism focus on one-dimensional probabilistic cellular automata, either on single examples or...
متن کاملProbabilistic models for drug dissolution. Part 1. Review of Monte Carlo and stochastic cellular automata approaches
Throughout the last decades, Monte Carlo (MC) techniques have been used in simulating various complex systems. In this paper, we investigate how MC-based methods are used in the field of Drug Delivery, indicating what aspects of the complex problems of drug dissolution and design can benefit from this particular approach. After introducing the area of modelling drug dissolution, with its differ...
متن کاملDirected percolation in asynchronous elementary cellular automata: a detailed study
Cellular automata are widely used to model natural systems. Classically they are run with perfect synchrony, i.e., the local rule is applied to each cell at each time step. A possible modification of the updating scheme consists in applying the rule with a fixed probability, called the synchrony rate. For some particular rules, varying the synchrony rate continuously produces a discontinuity in...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- J. Comput. Science
دوره 5 شماره
صفحات -
تاریخ انتشار 2014